BioJava aims to provide a comprehensive set of Java components for the rapid development of applications in Bioinformatics. It contains interfaces for representing Sequences, Features, and other important bioinformatics concepts. It can also read and write sequence data in a variety of common formats and communicate with Ensembl databases and with DAS and BioCorba servers.
Project Release infomations and Project Resources. Note that these informations are from this projects Freecode.com page and the downloads themselves may not be hosted with SourceForge.JP.
BioJava 1.2 includes considerable enhancements to the parsers for
Blast output and sequence file formats. There's also an improved
dynamic programming package, which can compile Hidden Markov Models to
Java bytecode, and support for the Distributed Annotation System 1.00.