New Releases of G-language

glang - 1.8.13

Kazuharu Arakawa (gaou) — Thu, 28 Apr 2011 17:44:00 GMT

ReleaseNote

see http://www.g-language.org/wiki/changelog for details

ChangeLog

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glang - 1.8.12

Kazuharu Arakawa (gaou) — Thu, 26 Aug 2010 16:56:00 GMT

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ChangeLog

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glang - 1.8.11

Kazuharu Arakawa (gaou) — Fri, 05 Feb 2010 13:41:00 GMT

ReleaseNote

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ChangeLog

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glang - 1.8.10

Kazuharu Arakawa (gaou) — Fri, 04 Dec 2009 08:15:00 GMT

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see http://www.g-language.org/wiki/changelog for details

ChangeLog

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glang - 1.8.9

Kazuharu Arakawa (gaou) — Sun, 16 Aug 2009 13:10:00 GMT

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ChangeLog

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glang - 1.8.8

Kazuharu Arakawa (gaou) — Sat, 14 Mar 2009 17:37:00 GMT

ReleaseNote

see http://www.g-language.org/wiki/changelog for details

ChangeLog

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glang - 1.8.7

Kazuharu Arakawa (gaou) — Fri, 13 Mar 2009 12:51:00 GMT

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ChangeLog

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glang - 1.8.6

Kazuharu Arakawa (gaou) — Wed, 11 Mar 2009 13:36:00 GMT

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ChangeLog

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glang - 1.8.5

Kazuharu Arakawa (gaou) — Fri, 31 Oct 2008 19:22:14 GMT

ReleaseNote

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ChangeLog

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glang - 1.8.4

Kazuharu Arakawa (gaou) — Fri, 16 May 2008 03:52:00 GMT

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ChangeLog

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glang - 1.8.3

Kazuharu Arakawa (gaou) — Mon, 21 Apr 2008 14:12:40 GMT

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ChangeLog

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glang - 1.8.2

Kazuharu Arakawa (gaou) — Wed, 27 Feb 2008 14:54:06 GMT

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ChangeLog

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glang - 1.8.1

Kazuharu Arakawa (gaou) — Thu, 14 Feb 2008 06:12:10 GMT

ReleaseNote

===== v.1.8.1 2008.02.14 =====
*mionor fix for dnawalk, genome_map3, circular_map for Genome Projector
*G::Tools::GMap::generateGMap() can now handle levels greater than 6
*HTML::Form now required for installation
*added G::Tools::EMBOSS, with seqret() , and G::Tools::Blast::blastall() by Kazuki Oshita
*added seqret.pl which is a simple script that use seqret() which functions identically as EMBOSS seqret command.
*added blastall.pl which is a simple script that use blastall() which functions identically as blastall commandline tool, but with DDBJ REST web service (so not formatdb required!).
*help command now stores documentation in virtual memory, and does not build everytime.
*help shows documentation when there is only one possible entry
*G::IO now keeps the pointer to the last instance created by new G(), which can be accessed by lastInstance G() or lastInstance G::IO(). SubOpt::opt_as_gb() now returns this lastInstance when there is no argument specified, so you can now do analysis in G-language Shell without making a variable for the G instance, as follows:

G > load ecoli
G > gcskew
[ecoli graph comes up]
G > load bsub
G > gcskew
[bsub graph comes up]

ChangeLog

glang - 1.8.0

Kazuharu Arakawa (gaou) — Thu, 14 Feb 2008 05:50:34 GMT

ReleaseNote

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ChangeLog

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glang - 1.7.8

Kazuharu Arakawa (gaou) — Thu, 15 Nov 2007 12:38:20 GMT

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ChangeLog

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glang - 1.7.7

Kazuharu Arakawa (gaou) — Mon, 05 Nov 2007 12:17:06 GMT

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ChangeLog

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glang - 1.7.6

Kazuharu Arakawa (gaou) — Tue, 23 Oct 2007 08:35:22 GMT

ReleaseNote

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ChangeLog

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glang - 1.7.5

Kazuharu Arakawa (gaou) — Wed, 26 Sep 2007 15:47:26 GMT

ReleaseNote

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ChangeLog

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glang - 1.7.4

Kazuharu Arakawa (gaou) — Sat, 08 Sep 2007 11:59:31 GMT

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ChangeLog

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glang - 1.7.3

Kazuharu Arakawa (gaou) — Fri, 07 Sep 2007 23:34:04 GMT

ReleaseNote

see see http://www.g-language.org/wiki/changelog

ChangeLog

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glang - 1.7.2

Kazuharu Arakawa (gaou) — Wed, 29 Aug 2007 19:45:22 GMT

ReleaseNote

see see http://www.g-language.org/wiki/changelog

ChangeLog

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glang - 1.7.1

Kazuharu Arakawa (gaou) — Wed, 29 Aug 2007 19:45:01 GMT

ReleaseNote

see http://www.g-language.org/wiki/changelog

ChangeLog

see http://www.g-language.org/wiki/changelog

glang - 1.7.0

Kazuharu Arakawa (gaou) — Mon, 09 Jul 2007 17:54:58 GMT

ReleaseNote

1.7.0 2007.07.10
-added sample genomes
-merged G-language Manager and g2s.pl to the package

ChangeLog

1.7.0 2007.07.10
-added sample genomes
-merged G-language Manager and g2s.pl to the package

glang - 1.6.13

Kazuharu Arakawa (gaou) — Sat, 07 Jul 2007 19:43:06 GMT

ReleaseNote

1.6.13 2007.07.07
-enabled searching for all modules with help -s|-g|-b
without any keyword
-G::Tools::GMap::generateGMap stopped tiling in the x-direction by default
-moved view_cds from G::Seq::GCskew to G::Seq::Util
-fixed the appearance of help -g
-tidying up of the codes of G::Seq::Util
-added -cumulative option for gcskew(), and cum_gcskew() is deprecated.
-added gcsi()
-added -filter option to find_ori_ter()

ChangeLog

glang - 1.6.12

Kazuharu Arakawa (gaou) — Sun, 24 Jun 2007 15:01:46 GMT

ReleaseNote

1.6.12 2007.06.23
-added clear_cache command to G-language Shell
-Math::FFT is now required.
-removed the following deprecated modules
G::SystemsBiology::Serizawa
G::SystemsBiology::EcellReader
G::SystemsBiology::Pathway
G::Tools::RCluster (this is moved to Rcmd::Clustering
-fixed line length bug in Rcmd.pm
-added G::Tools::GMap for generating Google Map View
-moved all methods related to GenomeMap to G::Seq::GenomeMap class
-added genome_map3

ChangeLog

glang - 1.6.11

Kazuharu Arakawa (gaou) — Wed, 13 Jun 2007 04:37:42 GMT

ReleaseNote

1.6.11 2007.06.12
-added documentation to G::Seq::Primitive
-added shuffleseq method
-made the "did you mean?" prediction of "help" smarter.
-help -s now showing abstract of the searched methods
updated documentations to match this.
-added Ruby-style "p" for G-language Shell which prints
the formatted data structures. "puts" also works in
Ruby-style, and Perl6 "say" is a nice replacement of
print, which prints lists separated by comma and also
ending with a newline.
-added Rcmd::Clutering
$rcmd->kmeans(), $rcmd->som(), $rcmd->hclust() added.
see help document for details.
-added Rcmd::Normality. $rcmd->normtest performs
test of normality using Anderson-Darling, Kolmogorov-Smirnov
Lilliefors, or Shapiro-Wilk method.
-modified Rcmd to have $rcmd->set_mode() for temporary
usage. Rcmd now inherits Rcmd::Clustering and Rcmd::Normality

ChangeLog

glang - 1.6.10

Kazuharu Arakawa (gaou) — Mon, 11 Jun 2007 11:59:47 GMT

ReleaseNote

1.6.10 2007.06.10
-bug fixes.
-packaging for MacOS X 10.4 (Intel)

ChangeLog

1.6.10 2007.06.10
-bug fixes.
-packaging for MacOS X 10.4 (Intel)

glang - 1.6.9

Kazuharu Arakawa (gaou) — Thu, 07 Jun 2007 21:48:54 GMT

ReleaseNote

マイナーアップデート。統計解析系。

ChangeLog

1.6.9 2007.06.07
-added G::Tools::Statistics
exported methods are:
mean
sum
variance
standard_deviation
min
mindex
max
maxdex
median
least_squares_fit
cor
ttest
where cor include options for Spearman's, Pearson's, and Kendall's methods,
and ttest supports both independent and paired Student's t-test.